Index C | D | E | G | I | L | M | N | P | R | S | T | W C Calibration (class in inquant_tools.Calibration) calibration() (inquant_tools.Calibration.Calibration method) compute_alignments() (inquant_tools.INQuant.INQuant method) D dev_matrix (inquant_tools.Calibration.Calibration attribute) E exp (inquant_tools.Calibration.Calibration attribute) G get_ppm_tolerance() (inquant_tools.Calibration.Calibration method) grid_basis (inquant_tools.Calibration.Calibration attribute) grid_zero (inquant_tools.Calibration.Calibration attribute) grouped_protein_dict (inquant_tools.INQuant.INQuant attribute) I INQuant (class in inquant_tools.INQuant) INQuant_close() (inquant_tools.INQuant.INQuant method) inquant_tools.Calibration module inquant_tools.INQuant module L load_mzml() (inquant_tools.Calibration.Calibration method) load_predictions() (inquant_tools.INQuant.INQuant method) load_proteome() (inquant_tools.INQuant.INQuant method) M make_peptide_table() (inquant_tools.INQuant.INQuant method) make_protein_table() (inquant_tools.INQuant.INQuant method) make_psm_table() (inquant_tools.INQuant.INQuant method) module inquant_tools.Calibration inquant_tools.INQuant N noise_variables (inquant_tools.INQuant.INQuant attribute) normalizer() (inquant_tools.INQuant.INQuant method) P peptide_columns (inquant_tools.INQuant.INQuant attribute) peptide_dict (inquant_tools.INQuant.INQuant attribute) protein_columns (inquant_tools.INQuant.INQuant attribute) protein_dict (inquant_tools.INQuant.INQuant attribute) proteome_description_dict (inquant_tools.INQuant.INQuant attribute) proteome_dict (inquant_tools.INQuant.INQuant attribute) psm_columns (inquant_tools.INQuant.INQuant attribute) R run() (inquant_tools.INQuant.INQuant method) S spectra_data (inquant_tools.Calibration.Calibration attribute) T time_flag() (inquant_tools.INQuant.INQuant method) total_weight (inquant_tools.Calibration.Calibration attribute) W weight() (inquant_tools.Calibration.Calibration method) write_calibrated_mzml_file() (inquant_tools.Calibration.Calibration method) write_calibrated_predictions_file() (inquant_tools.Calibration.Calibration method) write_files() (inquant_tools.INQuant.INQuant method)